rs8248009 SNP Detail

Summary

• ID
  rs8248009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24237018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT AGCTTGAGGT AGGAGTAGTG
  R
  AGCCAGACTA GCTTGGCTAC AATAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12743303	L32838_JC4373_7	ROCHEBIO	RPAMM	f	SNP	G		G	G				G	A	G					G	G			A
ss37426410	NES08783639	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G		A	G	A	G	G	G			G	A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8248009					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426410	NES08783639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24237018 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	583 bp proximal
Rr56387	regulatory region 56387	1418 bp distal
Tssr16578	transcription start site region 16578	1734 bp downstream
Tssr16579	transcription start site region 16579	1711 bp downstream
Tssr16580	transcription start site region 16580	1659 bp downstream
Tssr16581	transcription start site region 16581	1584 bp downstream
Tssr16582	transcription start site region 16582	448 bp upstream
Tssr16583	transcription start site region 16583	697 bp upstream
Tssr16584	transcription start site region 16584	1564 bp upstream