rs8249707 SNP Detail

Summary

• ID
  rs8249707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45217070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGGCTCC AGGTTAGACT
  ACTCTGTTGC TACTTCCAGA AGTTGTAACG GGCTCTAGAG ATAATATATT GCACATTTGC
  TGTCCAAAAG CAGAGGTAGT AATGAATTCA CTGCCGCATG GAGAATGTGT CTCCTTCATC
  ATTGTCTTCA ATGTTCGTGA TGGCAAGACC CTAGAGAGAA GACAGTTCCA ACCAAACAAC
  Y
  TAGTGCAGTG ATGTTAGCTC TCTAAATTCT GCAATAATAG TGACAGCAGG CACAAAAGGC
  TAAGAGTCTT CTAGTTCACC TGTTCATGTT TATGAATCAA AAATCCAAGT ACCATAACCA
  CATACTCAAT GCTCCTGGAA ATTATATTTC TGAAAGGGAA AGAGAGAGAG GGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745057	AF029215_AN1657_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249707					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45217070 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	991 bp proximal
Rr327058	regulatory region 327058	932 bp proximal
Tssr141233	transcription start site region 141233	422 bp downstream