rs8249709 SNP Detail

Summary

• ID
  rs8249709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45217160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGTAGT AATGAATTCA
  CTGCCGCATG GAGAATGTGT CTCCTTCATC ATTGTCTTCA ATGTTCGTGA TGGCAAGACC
  CTAGAGAGAA GACAGTTCCA ACCAAACAAC TTAGTGCAGT GATGTTAGCT CTCTAAATTC
  TGCAATAATA GTGACAGCAG GCACAAAAGG CTAAGAGTCT TCTAGTTCAC CTGTTCATGT
  Y
  TATGAATCAA AAATCCAAGT ACCATAACCA CATACTCAAT GCTCCTGGAA ATTATATTTC
  TGAAAGGGAA AGAGAGAGAG GGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA TGTATTCTCA AAGATTCTCA CCATAGAGGG
  TAAGGCAAGC TGTTCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745059	AF029215_AN1657_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249709					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45217160 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	901 bp proximal
Rr327058	regulatory region 327058	842 bp proximal
Tssr141233	transcription start site region 141233	332 bp downstream