rs8249714 SNP Detail

Summary

• ID
  rs8249714
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45216731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGTACC TAGTAAATCT
  CTCCTTTCCC ATGGCCAATT CACTCAGCAT GCTTAAAGCC TTGCTTCAAT ATTAGTAATG
  TCTCCGCTAG GTTTGTCTTC TCCCTCCTAA AGCCTCCACA TCACATTGGA TGTTACAAAG
  TCATCCTCAG TCCCACTTCC TAATGCTCCA TTGCAGTCAT GCGTTAGTAA AGAAGAAACA
  M
  TCTCTTCACA CCACTACGCC TAGGATGTTT AAAGAATGCT TTCTATCCTG TTATACTCCC
  AGTTAGGAAA AGCCTCTGCT GGCTGTACCC TTAGAAATCT TGAAACTGCT TCCTCGAACT
  AAAACAAGAA AGATATCATA TTGGCTCCAG GTTAGACTAC TCTGTTGCTA CTTCCAGAAG
  TTGTAACGGG CTCTAGAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12745064	AF029215_AN1658_1	ROCHEBIO	RPAMM	f	SNP	C		A	A	A	A	A	A		A	A	A					A	C	C
ss48208199	NES12148927	PERLEGEN	MM_PANEL2	f	SNP		C		A	A		A		C	A		A	A	C		A				C	A		A
ss325166234	CHEV_16_45396481	CHEVERUD	SCREENING_POP	f	SNP															A							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8249714					SNP	C	C	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208199	NES12148927	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45216731 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	1330 bp proximal
Tssr141233	transcription start site region 141233	761 bp downstream