rs8249724 SNP Detail

Summary

• ID
  rs8249724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45215719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTGTGA GCAATCTTTT
  CTGTTTTGTG TTTCTCAGAA ATCATCTGAC AGTATCCTCC CCCCCTCCCT TCAGCACCCC
  TCTATGGGTA CCCTTTACCT ATCAGAAGCA ACAGGCAGGG CACAGTTCCC AGAGCCTGTT
  GTTTAGGAAA AAAAAAATCC ATTTTTTTTC CCAAAAAGCA GAGAGGAGAC TTGCCCCCTC
  Y
  CTAAATTGCC TAGTTAGAAA ACCTATTAAA AATGCAAACT AGGAACTCAG AATCCATAAA
  TAAGATAATC AGAGAGTGAC TGTCGGAAAG GCCACAGGGT TCACCTGACA GACCTGGAAA
  ATTTGTTTAG AAAAAATGGA TATAATTTCC CCAGGAGTGT CAACCTGTCC ACTTTATAAT
  GGCCTCCCCA GCTAACAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745074	AF029215_AN1659_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45215719 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr141233	transcription start site region 141233	1773 bp downstream