rs8249725 SNP Detail

Summary

• ID
  rs8249725
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45215821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGCAAC AGGCAGGGCA
  CAGTTCCCAG AGCCTGTTGT TTAGGAAAAA AAAAATCCAT TTTTTTTCCC AAAAAGCAGA
  GAGGAGACTT GCCCCCTCCC TAAATTGCCT AGTTAGAAAA CCTATTAAAA ATGCAAACTA
  GGAACTCAGA ATCCATAAAT AAGATAATCA GAGAGTGACT GTCGGAAAGG CCACAGGGTT
  M
  ACCTGACAGA CCTGGAAAAT TTGTTTAGAA AAAATGGATA TAATTTCCCC AGGAGTGTCA
  ACCTGTCCAC TTTATAATGG CCTCCCCAGC TAACAACTAT ATTTCAGTTG GAATGTTGGC
  CTTATTTTGC CAACCAGTAC AAACCAACTC TTCTGTAGCT GGCTTTGCAG CCCATAAGTT
  AATTAGAAGC CAGTGGTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745075	AF029215_AN1659_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249725					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45215821 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr141233	transcription start site region 141233	1671 bp downstream