rs8249751 SNP Detail

Summary

• ID
  rs8249751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45218972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGAGGG AGCAATCCAA
  TGTCATACTA ACCATGAAAC CTCATGTACT TGACAACCTA ACCCTGAGAC ACACAAAGCA
  AACACTGTTG AAGTACAATA GCAATTTATA AACCCACAGT GATAATATGA GAGTTTTATA
  TTTGTCTGTC AGAACCTTCA ATTCCATAAG TTTAAATCAT TAAGGCAAAC ATTTAAATAT
  R
  ATAATATAGA AAATTTTAAA ATAAGCTTAT AGGTGTCTAT ATTTAATTTG AATACACTAG
  ATTTACATAG CCATTATATG TTTATATATA TATGGGTATA TATTATATAT ATGTATACTA
  CTGAGTCATA AAATGTATAA TCTTTTCAAA AAACAAAATA TTTCCCCAAA CTGAACTTGA
  AATTGATCTT AAAAATTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss12745110	AF029215_AN1672_1	ROCHEBIO	RPAMM	f	SNP	A		G	G	G	G	G	G	G			G	A	A
ss148077895	ENSMUSSNP1510723	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss325166275	CHEV_16_45398722	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs8249751					SNP	A	A	G	G	G	G	G	G	G	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45218972 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	773 bp distal
Rr318478	regulatory region 318478	1629 bp proximal
Rr327058	regulatory region 327058	572 bp distal
Rr327059	regulatory region 327059	430 bp proximal
Tssr141233	transcription start site region 141233	1464 bp upstream