rs8249758 SNP Detail

Summary

• ID
  rs8249758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45216259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTGCAG TAGCTGGGGG
  AGTGGAACTG TAGAAGGGTG CTCAAATTCC AAGAATCAGT AAGTGCTGGG AGAGATAAAA
  AGTAAGGAAA AATGAGTATG ATTTATGTGA TTATACTGTG TCTCATAGTT TATGGGCTTA
  TCAGAGAATG GCTTAGATAG ATGCAAGTTG TATGGTTGGA TAGAAAGGGG AGGATTTCCC
  R
  TTTGGGGGGT GGAGGGAGAA TGAGCAGGAG AGAAAGAACT AGAGAAAAAT TGCAGAAATT
  ATAAAGTGTG AAATGAGAAG CAAAACAAAC AAACAAACAA ACAAACAAAA CAAGGAGAAG
  AAGACAAGAA GGAGGGATAT GAGAGGGAGG AAGAAAGACA GTAAGAGAAA TAGACAAATG
  AAAATTTTGG GAGAAAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745121	AF029215_AN1674_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249758					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45216259 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	1802 bp proximal
Rr327058	regulatory region 327058	1743 bp proximal
Tssr141233	transcription start site region 141233	1233 bp downstream