rs8249920 SNP Detail

Summary

• ID
  rs8249920
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:129980402 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                           gncggtt caagggttng ganccccggt ggttttatng
  aagncccngg ttcnnttccc agcacccaca tggTCCCNGG GTATCCAACA GGCNGGTAAA
  TGGTACACAT GCTGGGGAAA CATTCTTTTT AAAAAAGGTA AACANNACTC AAACACTTTC
  H
  CCTACTCATG AAAATAAAGT CCTTTTTAAA ATTCCAATGT TGCCTTTAAA GAATGAATCA
  CCAAGTTCTC AGAATTCACG TTTAATAGAT ACTTAAAAAA AGAAGAAAAA AGAATTAACA
  GGTTGTTTTC TGTGACTGAT AGAAGATGGT CTGCCCAAAA CACAGCTCAN ACCATTACCA
  NTANNGGANA AAAAGGTATC CTTCCCCACC CCTGNANGAA AA                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745303	AF157331_AN1727_6	ROCHEBIO	RPAMM	f	SNP	C	A	C	C	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249920					SNP	C	A	C	C	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:129980402 () rs orientation: reverse

Symbol	Name	Function Class
Gm21399	predicted gene, 21399	327 bp downstream
Gm64945	predicted gene, 64945	66 bp downstream
Tssr2751	transcription start site region 2751	986 bp downstream
Tssr2752	transcription start site region 2752	948 bp downstream
Tssr2753	transcription start site region 2753	676 bp downstream