rs8249997 SNP Detail

Summary

• ID
  rs8249997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171044212 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ACCATAAACG TGTTGATATC
  TGCAAAGTGT GTGAGCAGAG GCAACACGGG GCCCCGAGGC TGGAAAGGCC GGTGATGCAT
  GAACAGATAG GCCGGAGGCT GTAGAGTTCA GAGCTTTAGT AAGAGGCCCC AGCCTTGGCT
  GCCCTTGAGG GCTCACCAGG CTTATCTAAG AAAGGTTTTT TGCTGAGGAA CCTGCCCATC
  S
  TGGGATTCTG GAGATCTGTT CTCCATCAGG GCATAGCCTT CTTCTGTGGG TTACCTCCTC
  AGGTACCCAG GTCACATCCT GGTTAAGTTC TCACCTTGAA CTGCACAAAC TGGTCAAACA
  TGGGGCCCAC ATGGCGAGTG TGGGCCCCCA GGAGGATCTG GACCAGTTCT TTCTGCTGCT
  GATTCAGTTG CAAAGATGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745394	Fer1g_5_AN2515_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249997					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171044212 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates