rs8250000 SNP Detail

Summary

• ID
  rs8250000
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171044720 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GTGGAGGATC GACTCCAAAA
  ACTCGTACTG GAACCCTGCT GTGAGAGATG GTAGACTGAG GAGCCTCCTG GCCATTGCTC
  CACACCTCAT ACCACTGAGA TACATACCCT GGACCGTTCT ACCATCTCAC CATGGACTGC
  GTCCTCCATC TTGTAGCAAA GAGGCCCACA GAAGAAATTC TCTGTTTGAA GACAGAACGT
  W
  GTGTTGAGTG AGATATGCAA TATTTCCACA GCCGCTCCCT TGAGAAGGGA GATCTGGTCC
  TCCATGGTTA GGGACCTGTG TCGGGTAGAA AACAAGGGCA CTTTAGACTT AGGTCTATCC
  ATCAAAAAAA AGGTCCAATC GGCACACTGC AAATGTAAGA CCCTAGCACT CAGAAGGCTA
  AAGGATGTCA TACCAGTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745399	Fer1g_5_AN2517_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8250000					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171044720 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates
Tssr286	transcription start site region 286	1981 bp upstream