rs8250390 SNP Detail

Summary

• ID
  rs8250390
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91442922 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AAGTCTATCT TATGTGTAGG
  AGCGTTGTCC CTTACATGTA TGTTTGTGCC CACGTGCATA CAATGAACGC CCCAAAGAAG
  CCGGAAGAAA GCATTCAGTC TCCAGACCCA GATTAGGATG TTTGTGAGCC ACCTTGTGGG
  TGCTGGGAGA CTAAACCCCA GCCCTCTGCA AGAGAACTAA GTGTTCTTAA CCTTACCAGT
  S
  TGCTTGGGTT TTCCTTAAAT ATGTAATCCC AAAGTAAAGG ATCAATTTAG AATTTACATA
  TTTCAGTTTT CTTCTTTCCG TAACCATCTT CTACATAAGT AAATATCTTG ATAATATCTT
  TGCTCCCCCC CCTCCTTTTA TTGGTGCTAG AATTTGAACA CAAGGCTTCT ATTCTAAGCA
  ATAGGTATCA ATTAGGTATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	CAST/EiJ
ss12745888	U20874_123_2	ROCHEBIO	RPAMM	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	CAST/EiJ
rs8250390					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91442922 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	635 bp proximal
Gart	phosphoribosylglycinamide formyltransferase	within coordinates
Rr319637	regulatory region 319637	322 bp distal
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	1524 bp upstream
Son	Son DNA binding protein	1790 bp upstream
Tssr139422	transcription start site region 139422	1026 bp upstream
Tssr139423	transcription start site region 139423	1808 bp upstream
Tssr139424	transcription start site region 139424	1825 bp upstream
Tssr142101	transcription start site region 142101	872 bp downstream
Tssr142102	transcription start site region 142102	1595 bp downstream
Tssr142103	transcription start site region 142103	1657 bp downstream