rs8250467 SNP Detail

Summary

• ID
  rs8250467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45229068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGAGAG GGGGTGAGAA
  AGAGAGCAAG CGAGATTACT AGGCTACACC CCTGCTGCAG GTTAAGGACC AACATAGGGG
  ACGCAAAGAG CTACTCCTCC CCTTCTGGGA GCCATGGAGC TCAGGCCGTG TTTTCGCAAT
  GGAATCGCAG CAAGGAGCAA AGCCGCCCAC CCTAGATACA CGCGTTCCCC GGGCTTTCTC
  Y
  GGCCGGTGCC TCCTTACAGA GCTCCGAGCC CCGGATACCA CTTCTCCAAA GAACAGCTTC
  CTTGCTTTTC TCGCAGGCTC CACTGGCTTC TGAGAGCCGC GGCTCCAGAT CGCCCATTCC
  GCCCTCCTTC GCATCTCAGA TTCCACTCAC CAGACTGCCC ATCCTTGCTC TGGGCCGCAG
  CTAGACACCA GCTTCTCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12745998	AF029214_JC241_1	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	C	T	C			C		C	C
ss48208397	NES12148706	PERLEGEN	MM_PANEL2	f	SNP		C		C	C		C		C			T	C	C	C		C			C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8250467					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208397	NES12148706	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45229068 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	within coordinates
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	227 bp downstream
Tssr141235	transcription start site region 141235	250 bp downstream