rs8251120 SNP Detail

Summary

• ID
  rs8251120
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133501843 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTAAA GAGAGCGCCA ATACATGCGT
  K
  TCTTACCTGA CTGTTCATTG GTTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	SPRET/EiJ
ss12746674	U58105_BS1815_11	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	SPRET/EiJ
rs8251120					SNP	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133501843 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	within coordinates
Gla	galactosidase, alpha	136 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	85 bp upstream
Rr406169	regulatory region 406169	within coordinates
Rr693597	regulatory region 693597	within coordinates
Rr693598	regulatory region 693598	203 bp proximal
Tssr162002	transcription start site region 162002	117 bp upstream
Tssr162003	transcription start site region 162003	178 bp upstream
Tssr164150	transcription start site region 164150	793 bp upstream
Tssr164151	transcription start site region 164151	760 bp upstream
Tssr164152	transcription start site region 164152	129 bp upstream
Tssr164153	transcription start site region 164153	104 bp upstream
Tssr164154	transcription start site region 164154	47 bp downstream
Tssr164155	transcription start site region 164155	414 bp downstream