rs8251200 SNP Detail

Summary

• ID
  rs8251200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56499952 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGACT CAGCATCCAA AACACTGATG
  Y
  TCCACCACTG GGAGCTTGGG TTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12746772	M22526_MC1242_1	ROCHEBIO	RPAMM	f	SNP				C			T	C					C
ss52723305	NES15569351	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	A	G	G	G	G	G		G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8251200					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723305	NES15569351	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56499952 () rs orientation: reverse

Symbol	Name	Function Class
Gzmb	granzyme B	235 bp upstream
Rr295614	regulatory region 295614	within coordinates
Tssr128924	transcription start site region 128924	308 bp upstream
Tssr128925	transcription start site region 128925	267 bp upstream
Tssr128926	transcription start site region 128926	247 bp upstream