rs8251546 SNP Detail

Summary

• ID
  rs8251546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30427045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGGAGGT AACCAGTTTT
  GGGAAGACTC ACCATGGAAG AGGGCTCAAA CCAAGCTGTA AGTTGAGGAA GAATGCCCCT
  CTACCCCAAA GCCCCCTCCT GAACTCTAGT GTGTTCATTC CTTAGCTTGT TCAATGATTA
  CCAAGCCCCC AGGTTCTCAT GGGGAAACCA GGAAGACTGG CCAACATTCC AGCTTATTTA
  Y
  CTGGTTCTGA AGCCAGACAG ACTCTGTGAG ACCTAAGTCC GAGGATTCGG TTTCTGAGAG
  AGAGAGATGG ACATAACAAA AACCTTTCCA AACACTGTTT ACTTCACTGA AATCTGGAGA
  GAGGAAATGA AAAGGTTCGC CAACACCTGA GATGTCAAGC TAGGAGTGTA CATTGACAAC
  AGCAACATAC AGGGCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747146	Atp4a_Gapds_JC4131_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251546					SNP	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30427045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	1466 bp proximal
Rr400253	regulatory region 400253	1939 bp upstream
Rr644901	regulatory region 644901	796 bp proximal
Rr644902	regulatory region 644902	1348 bp proximal
Rr644903	regulatory region 644903	1691 bp proximal
Tmem147	transmembrane protein 147	81 bp downstream
Tssr65802	transcription start site region 65802	1943 bp upstream
Tssr71842	transcription start site region 71842	1192 bp downstream
Tssr71843	transcription start site region 71843	1815 bp downstream
Tssr71844	transcription start site region 71844	1848 bp downstream
Tssr71845	transcription start site region 71845	1885 bp downstream