rs8251547 SNP Detail

Summary

• ID
  rs8251547
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30427165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCTTGT TCAATGATTA
  CCAAGCCCCC AGGTTCTCAT GGGGAAACCA GGAAGACTGG CCAACATTCC AGCTTATTTA
  TCTGGTTCTG AAGCCAGACA GACTCTGTGA GACCTAAGTC CGAGGATTCG GTTTCTGAGA
  GAGAGAGATG GACATAACAA AAACCTTTCC AAACACTGTT TACTTCACTG AAATCTGGAG
  M
  GAGGAAATGA AAAGGTTCGC CAACACCTGA GATGTCAAGC TAGGAGTGTA CATTGACAAC
  AGCAACATAC AGGGCCAAGG TGCTGAGGGC CAGCAGTCCT GTTACTACTG CCCGGGCGAG
  CAGTGCTGTC CAACTACCCA AGGAGAAGAG GTGGACGAAG GTCCTGTGGG GAAACATCAC
  AATGAGGAAA AGGAGAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747147	Atp4a_Gapds_JC4131_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251547					SNP	A	A	A	A	C	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30427165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	1346 bp proximal
Rr400253	regulatory region 400253	1819 bp upstream
Rr644901	regulatory region 644901	676 bp proximal
Rr644902	regulatory region 644902	1228 bp proximal
Rr644903	regulatory region 644903	1571 bp proximal
Tmem147	transmembrane protein 147	within coordinates
Tmem147os	transmembrane protein 147, opposite strand	1889 bp upstream
Tssr65802	transcription start site region 65802	1823 bp upstream
Tssr65803	transcription start site region 65803	1969 bp upstream
Tssr71842	transcription start site region 71842	1072 bp downstream
Tssr71843	transcription start site region 71843	1695 bp downstream
Tssr71844	transcription start site region 71844	1728 bp downstream
Tssr71845	transcription start site region 71845	1765 bp downstream