rs8251549 SNP Detail

Summary

• ID
  rs8251549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30427719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGATGTAG TGGACCTGCA
  GGGAGGCAGG AAGGGACTGG GAAGTTGGAG CCAAGTTTTT GGGAGAAGTA TGGCTAACAA
  CATAAAGGTA GGCTAGGGCT AGACTGCATA CCAGACTGAT GTTGGAGTCA ATGCTCATCT
  GGATATATTT CCAGTCAAAT TCAATGCCTC GGGCTCCCAC CCAGAGGGGG ATGCATCTGA
  R
  GAAGGCAAAA GGAGGCAGTC TCTAGTACCC AGACTCCCCC ACCCCCAGCA CCCAGCCTCT
  GATCACCTCC CCTCAGCACC CCTGTGGGAC CCAGCTGTCC ATTCCCGGAA GTCTGGGCTC
  CAGTTTGCTC CACACACCGG GACATAATGA GTTCAGCAGT GGCCCAGCCC AGGGCAGCAA
  CCATAATCTT GTACTCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747149	Atp4a_Gapds_JC4133_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251549					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30427719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	792 bp proximal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	1485 bp downstream
Rr400253	regulatory region 400253	1265 bp upstream
Rr644901	regulatory region 644901	122 bp proximal
Rr644902	regulatory region 644902	674 bp proximal
Rr644903	regulatory region 644903	1017 bp proximal
Tmem147	transmembrane protein 147	within coordinates
Tmem147os	transmembrane protein 147, opposite strand	1335 bp upstream
Tssr65802	transcription start site region 65802	1269 bp upstream
Tssr65803	transcription start site region 65803	1415 bp upstream
Tssr65804	transcription start site region 65804	1501 bp upstream
Tssr71842	transcription start site region 71842	518 bp downstream
Tssr71843	transcription start site region 71843	1141 bp downstream
Tssr71844	transcription start site region 71844	1174 bp downstream
Tssr71845	transcription start site region 71845	1211 bp downstream