rs8251550 SNP Detail

Summary

• ID
  rs8251550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30428401 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTAGT GCGATATTTC ACCCACAGGG
  Y
  GTCGCAGGGT GCTGCCTAGG CATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12747150	Atp4a_Gapds_JC4134_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8251550					SNP	T	T	T	T	T	T	T	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30428401 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	110 bp proximal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	803 bp downstream
Rr400253	regulatory region 400253	583 bp upstream
Rr644901	regulatory region 644901	60 bp distal
Rr644902	regulatory region 644902	within coordinates
Rr644903	regulatory region 644903	335 bp proximal
Tmem147	transmembrane protein 147	within coordinates
Tmem147os	transmembrane protein 147, opposite strand	653 bp upstream
Tssr65802	transcription start site region 65802	587 bp upstream
Tssr65803	transcription start site region 65803	733 bp upstream
Tssr65804	transcription start site region 65804	819 bp upstream
Tssr71842	transcription start site region 71842	139 bp upstream
Tssr71843	transcription start site region 71843	459 bp downstream
Tssr71844	transcription start site region 71844	492 bp downstream
Tssr71845	transcription start site region 71845	529 bp downstream