rs8251553 SNP Detail

Summary

• ID
  rs8251553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAACAG GGTCATGACG
  CCAGCCGCCC GGTCCCGCAA ATGCGGGACT CGCCAGGCGC AGCGTCTCCT CTAGTCGGCC
  TCGCCGGCAC CGGGGCCTGG CGCCCACCTG CTTTGCCGTG GCCCGCGCGC GGCCTTATGG
  GAACTGTAGT CCGGCCTGGT ACGTCGCGTG CAGTGACGTC AGAGCGCCCA GCTCCGGCTG
  Y
  GTTGCAGGGA CTTCCAGAGC CTTGCTTACA CCGTTGAAGA CCTTGTGTTC AGACAGCGCT
  TTCCCTCTCC CACTCGGCTC GGAGCCAAGC GCCACCTCTT CTCGCTCATC CGAGAACTTT
  GAACCCCGCC CTGAACGCAA GGTGATCGGC GCAGAGACAA GAGGGCAAAG CTGTGCGCAT
  TCTCGTTTTT ATTTCATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747153	Atp4a_Gapds_JC4135_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251553					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	174 bp downstream
Rr400253	regulatory region 400253	within coordinates
Rr644901	regulatory region 644901	689 bp distal
Rr644902	regulatory region 644902	616 bp distal
Rr644903	regulatory region 644903	within coordinates
Tmem147	transmembrane protein 147	71 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	24 bp upstream
Tssr65802	transcription start site region 65802	within coordinates
Tssr65803	transcription start site region 65803	104 bp upstream
Tssr65804	transcription start site region 65804	190 bp upstream
Tssr65805	transcription start site region 65805	1569 bp upstream
Tssr71842	transcription start site region 71842	768 bp upstream
Tssr71843	transcription start site region 71843	152 bp upstream
Tssr71844	transcription start site region 71844	104 bp upstream
Tssr71845	transcription start site region 71845	49 bp upstream