rs8251557 SNP Detail

Summary

• ID
  rs8251557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACCTGC TTTGCCGTGG
  CCCGCGCGCG GCCTTATGGG AACTGTAGTC CGGCCTGGTA CGTCGCGTGC AGTGACGTCA
  GAGCGCCCAG CTCCGGCTGT GTTGCAGGGA CTTCCAGAGC CTTGCTTACA CCGTTGAAGA
  CCTTGTGTTC AGACAGCGCT TTCCCTCTCC CACTCGGCTC GGAGCCAAGC GCCACCTCTT
  Y
  TCGCTCATCC GAGAACTTTG AACCCCGCCC TGAACGCAAG GTGATCGGCG CAGAGACAAG
  AGGGCAAAGC TGTGCGCATT CTCGTTTTTA TTTCATTGTT GACCCGGTGG CGGCGCCTTT
  GAGTGGAAGC CGAAGTCAGG AACGCGAGGT GCGCAGGGGA GCAAGGAGGG GCCTTTTGTG
  TTACTTCTCT CGGCTAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747157	Atp4a_Gapds_JC4135_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251557					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	73 bp downstream
Rr400253	regulatory region 400253	within coordinates
Rr644901	regulatory region 644901	790 bp distal
Rr644902	regulatory region 644902	717 bp distal
Rr644903	regulatory region 644903	67 bp distal
Tmem147	transmembrane protein 147	172 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	63 bp downstream
Tssr65803	transcription start site region 65803	3 bp upstream
Tssr65804	transcription start site region 65804	89 bp upstream
Tssr65805	transcription start site region 65805	1468 bp upstream
Tssr71842	transcription start site region 71842	869 bp upstream
Tssr71843	transcription start site region 71843	253 bp upstream
Tssr71844	transcription start site region 71844	205 bp upstream
Tssr71845	transcription start site region 71845	150 bp upstream