rs8251558 SNP Detail

Summary

• ID
  rs8251558
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTGCCG TGGCCCGCGC
  GCGGCCTTAT GGGAACTGTA GTCCGGCCTG GTACGTCGCG TGCAGTGACG TCAGAGCGCC
  CAGCTCCGGC TGTGTTGCAG GGACTTCCAG AGCCTTGCTT ACACCGTTGA AGACCTTGTG
  TTCAGACAGC GCTTTCCCTC TCCCACTCGG CTCGGAGCCA AGCGCCACCT CTTCTCGCTC
  W
  TCCGAGAACT TTGAACCCCG CCCTGAACGC AAGGTGATCG GCGCAGAGAC AAGAGGGCAA
  AGCTGTGCGC ATTCTCGTTT TTATTTCATT GTTGACCCGG TGGCGGCGCC TTTGAGTGGA
  AGCCGAAGTC AGGAACGCGA GGTGCGCAGG GGAGCAAGGA GGGGCCTTTT GTGTTACTTC
  TCTCGGCTAA ACATGTAGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747158	Atp4a_Gapds_JC4135_7	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251558					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	66 bp downstream
Rr400253	regulatory region 400253	within coordinates
Rr644901	regulatory region 644901	797 bp distal
Rr644902	regulatory region 644902	724 bp distal
Rr644903	regulatory region 644903	74 bp distal
Tmem147	transmembrane protein 147	179 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	70 bp downstream
Tssr65803	transcription start site region 65803	within coordinates
Tssr65804	transcription start site region 65804	82 bp upstream
Tssr65805	transcription start site region 65805	1461 bp upstream
Tssr71842	transcription start site region 71842	876 bp upstream
Tssr71843	transcription start site region 71843	260 bp upstream
Tssr71844	transcription start site region 71844	212 bp upstream
Tssr71845	transcription start site region 71845	157 bp upstream