rs8251878 SNP Detail

Summary

• ID
  rs8251878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30428597 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGAC TCCCGGACTC CACGTGTCTG
  R
  CCTCCAGGCA TTCCAGATCT CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12747519	Atp4a_Gapds_JC4155_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8251878					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30428597 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	607 bp downstream
Rr400253	regulatory region 400253	387 bp upstream
Rr644901	regulatory region 644901	256 bp distal
Rr644902	regulatory region 644902	183 bp distal
Rr644903	regulatory region 644903	139 bp proximal
Tmem147	transmembrane protein 147	within coordinates
Tmem147os	transmembrane protein 147, opposite strand	457 bp upstream
Tssr65802	transcription start site region 65802	391 bp upstream
Tssr65803	transcription start site region 65803	537 bp upstream
Tssr65804	transcription start site region 65804	623 bp upstream
Tssr71842	transcription start site region 71842	335 bp upstream
Tssr71843	transcription start site region 71843	263 bp downstream
Tssr71844	transcription start site region 71844	296 bp downstream
Tssr71845	transcription start site region 71845	333 bp downstream