rs8251879 SNP Detail

Summary

• ID
  rs8251879
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30430343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACATGTTTA TCACCTGTAC CTGGTGTACC GGTACATGTG
  CCCCGTGCAT CTGCATGTAC CCACACGGGG GAAGAGGATA CAGATCACAA TACCCTAATG
  M
  GGTTGCATTA AACGTTACAT GAAGCGATGA CTGGCACGAG GCTGGGTCTT GGGAGCAGAG
  GGAAGGAGCT ACAGACACAG ATCTTGGGGG CTGTAGCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12747520	Atp4a_Gapds_JC4156_1	ROCHEBIO	RPAMM	f	SNP	A		A		A	A	A	A		C	C		A	C	C		C
ss46148627	mCV25319227	ABI	CRAMUS_MOUSE	f	SNP		A		A					A		C
ss148686875	ENSMUSSNP4201639	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A							C
ss322136285	CHEV_7_31515937	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8251879					SNP	A	A	A	A	A	A	A	A	A	C	C	A	A	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30430343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	906 bp distal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	1059 bp downstream
Rr644902	regulatory region 644902	1929 bp distal
Rr644903	regulatory region 644903	1279 bp distal
Tmem147	transmembrane protein 147	1384 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	1275 bp downstream
Tssr65803	transcription start site region 65803	1159 bp downstream
Tssr65804	transcription start site region 65804	1112 bp downstream
Tssr65805	transcription start site region 65805	256 bp upstream
Tssr71843	transcription start site region 71843	1465 bp upstream
Tssr71844	transcription start site region 71844	1417 bp upstream
Tssr71845	transcription start site region 71845	1362 bp upstream