rs8251880 SNP Detail

Summary

• ID
  rs8251880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30430346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAGGCT CCTTGGAACA
  AGATGACTAG CTAGATTAGT TAGTTGTCAA GCTACCTTAC ATCTTGCCTC GGTAACAAGT
  GGAGTGCAAT GGAGGAAGAC ATGTTTATCA CCTGTACCTG GTGTACCGGT ACATGTGCCC
  CGTGCATCTG CATGTACCCA CACGGGGGAA GAGGATACAG ATCACAATAC CCTAATGAGG
  W
  TGCATTAAAC GTTACATGAA GCGATGACTG GCACGAGGCT GGGTCTTGGG AGCAGAGGGA
  AGGAGCTACA GACACAGATC TTGGGGGCTG TAGCCCTTAG GAACACAGGG GGTTGGGGGT
  GGGTTGGCAT TGGGGCTGAT TTGATCTGAC CCATTCAAAT GACATCTTGG CATTTGAGAG
  TGGACCTGTA AAAGCCAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747521	Atp4a_Gapds_JC4156_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251880					SNP	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30430346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	909 bp distal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	1062 bp downstream
Rr644902	regulatory region 644902	1932 bp distal
Rr644903	regulatory region 644903	1282 bp distal
Tmem147	transmembrane protein 147	1387 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	1278 bp downstream
Tssr65803	transcription start site region 65803	1162 bp downstream
Tssr65804	transcription start site region 65804	1115 bp downstream
Tssr65805	transcription start site region 65805	253 bp upstream
Tssr71843	transcription start site region 71843	1468 bp upstream
Tssr71844	transcription start site region 71844	1420 bp upstream
Tssr71845	transcription start site region 71845	1365 bp upstream