rs8251881 SNP Detail

Summary

• ID
  rs8251881
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30430351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCCTTG GAACAAGATG
  ACTAGCTAGA TTAGTTAGTT GTCAAGCTAC CTTACATCTT GCCTCGGTAA CAAGTGGAGT
  GCAATGGAGG AAGACATGTT TATCACCTGT ACCTGGTGTA CCGGTACATG TGCCCCGTGC
  ATCTGCATGT ACCCACACGG GGGAAGAGGA TACAGATCAC AATACCCTAA TGAGGTTGCA
  K
  TAAACGTTAC ATGAAGCGAT GACTGGCACG AGGCTGGGTC TTGGGAGCAG AGGGAAGGAG
  CTACAGACAC AGATCTTGGG GGCTGTAGCC CTTAGGAACA CAGGGGGTTG GGGGTGGGTT
  GGCATTGGGG CTGATTTGAT CTGACCCATT CAAATGACAT CTTGGCATTT GAGAGTGGAC
  CTGTAAAAGC CAAATGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12747522	Atp4a_Gapds_JC4156_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8251881					SNP	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30430351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	914 bp distal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	1067 bp downstream
Rr644902	regulatory region 644902	1937 bp distal
Rr644903	regulatory region 644903	1287 bp distal
Tmem147	transmembrane protein 147	1392 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	1283 bp downstream
Tssr65803	transcription start site region 65803	1167 bp downstream
Tssr65804	transcription start site region 65804	1120 bp downstream
Tssr65805	transcription start site region 65805	248 bp upstream
Tssr71843	transcription start site region 71843	1473 bp upstream
Tssr71844	transcription start site region 71844	1425 bp upstream
Tssr71845	transcription start site region 71845	1370 bp upstream