rs8252771 SNP Detail

Summary

• ID
  rs8252771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26726490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATA TCCTCCTGGC ACAATCCTCC
  Y
  AGACCTCTGC CAGCTCTGCC ACCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12748454	S64851_563B_5	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C	C	T	C	C		C	T		C
ss39502162	mCV23814921	ABI	CRAMUS_MOUSE	f	SNP		C		C						T		C
ss145404928	ENSMUSSNP7131405	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C								C
ss325342192	CHEV_17_26644461	CHEVERUD	SCREENING_POP	f	SNP													T			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8252771					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26726490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	166 bp distal
Cpgi8811	CpG island 8811	54 bp proximal
Dusp1	dual specificity phosphatase 1	within coordinates
Gm56886	predicted gene, 56886	1020 bp upstream
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	916 bp upstream
Rr405113	regulatory region 405113	1288 bp upstream
Rr406958	regulatory region 406958	1336 bp proximal
Tssr5044	transcription start site region 5044	1435 bp upstream
Tssr5045	transcription start site region 5045	1947 bp downstream
Tssr5046	transcription start site region 5046	2000 bp downstream
Tssr143230	transcription start site region 143230	1145 bp downstream
Tssr143231	transcription start site region 143231	15 bp downstream
Tssr143232	transcription start site region 143232	1132 bp upstream
Tssr143233	transcription start site region 143233	1181 bp upstream
Tssr143234	transcription start site region 143234	1233 bp upstream
Tssr146939	transcription start site region 146939	1549 bp upstream
Tssr146940	transcription start site region 146940	1519 bp upstream
Tssr146941	transcription start site region 146941	1350 bp upstream
Tssr146942	transcription start site region 146942	1328 bp upstream
Tssr146943	transcription start site region 146943	1246 bp upstream
Tssr146944	transcription start site region 146944	1121 bp upstream
Tssr146945	transcription start site region 146945	1058 bp upstream
Tssr146946	transcription start site region 146946	1000 bp upstream
Tssr146947	transcription start site region 146947	979 bp upstream
Tssr146948	transcription start site region 146948	953 bp upstream
Tssr146949	transcription start site region 146949	885 bp upstream
Tssr146950	transcription start site region 146950	344 bp upstream
Tssr146951	transcription start site region 146951	112 bp downstream
Tssr146952	transcription start site region 146952	673 bp downstream
Tssr146953	transcription start site region 146953	698 bp downstream
Tssr146954	transcription start site region 146954	947 bp downstream
Tssr146955	transcription start site region 146955	1348 bp downstream
Tssr146956	transcription start site region 146956	1978 bp downstream