rs8252871 SNP Detail

Summary

• ID
  rs8252871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36787844 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGTT AAAGGAGAGG AAGGTCTCAG
  R
  AAGCCAGGAA GCCCACTCTA ATTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12748554	S52337_77_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8252871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36787844 () rs orientation: reverse

Symbol	Name	Function Class
Ptn	pleiotrophin	730 bp upstream
Rr135017	regulatory region 135017	1957 bp proximal
Rr146140	regulatory region 146140	43 bp distal
Tssr60337	transcription start site region 60337	935 bp upstream
Tssr60338	transcription start site region 60338	909 bp upstream
Tssr60339	transcription start site region 60339	885 bp upstream
Tssr60340	transcription start site region 60340	852 bp upstream
Tssr60341	transcription start site region 60341	818 bp upstream
Tssr60342	transcription start site region 60342	783 bp upstream
Tssr60343	transcription start site region 60343	762 bp upstream
Tssr60344	transcription start site region 60344	722 bp upstream