rs8252874 SNP Detail

Summary

• ID
  rs8252874
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36787741 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CAAATTGGGG TTTTACTCCA
  TCTTTTCTGG TCAGTTTCTA TGTGTGACTC AAAACTGTCA CTTTGCTCTC CTTGGTTAAA
  GGAGAGGAAG GTCTCAGGAA GCCAGGAAGC CCACTCTAAT TCTTACAAAC CCCAGAGCTT
  GAGCCACACT GATTACCCCC CTGTGTTCTT TGCCAAGAGC ATGCCACAAA ATATGTGACC
  S
  GAAGGCATCG AAGAAGCCAA GAATGGAAAA ATTCCCTAAA GGAAAGTGAC ATTTAATTGG
  GAAATTTCAG AGATCTGTCA CTCCTAGTGA CAACCCAGAA AAAACTGCTT TGCAGCTTTG
  TGACTGGAGG TGAGCTGCAA CTGTCAGCTG AAGTTAGCAG GGACTCCCTG CAGGGAGGCC
  TTTAGGGGCG GAGAGCAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12748557	S52337_77_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8252874					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36787741 () rs orientation: reverse

Symbol	Name	Function Class
Ptn	pleiotrophin	627 bp upstream
Rr146140	regulatory region 146140	within coordinates
Tssr60337	transcription start site region 60337	832 bp upstream
Tssr60338	transcription start site region 60338	806 bp upstream
Tssr60339	transcription start site region 60339	782 bp upstream
Tssr60340	transcription start site region 60340	749 bp upstream
Tssr60341	transcription start site region 60341	715 bp upstream
Tssr60342	transcription start site region 60342	680 bp upstream
Tssr60343	transcription start site region 60343	659 bp upstream
Tssr60344	transcription start site region 60344	619 bp upstream