rs8252876 SNP Detail

Summary

• ID
  rs8252876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36787717 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTCTGGTCAG TTTCTATGTG
  TGACTCAAAA CTGTCACTTT GCTCTCCTTG GTTAAAGGAG AGGAAGGTCT CAGGAAGCCA
  GGAAGCCCAC TCTAATTCTT ACAAACCCCA GAGCTTGAGC CACACTGATT ACCCCCCTGT
  GTTCTTTGCC AAGAGCATGC CACAAAATAT GTGACCCGAA GGCATCGAAG AAGCCAAGAA
  W
  GGAAAAATTC CCTAAAGGAA AGTGACATTT AATTGGGAAA TTTCAGAGAT CTGTCACTCC
  TAGTGACAAC CCAGAAAAAA CTGCTTTGCA GCTTTGTGAC TGGAGGTGAG CTGCAACTGT
  CAGCTGAAGT TAGCAGGGAC TCCCTGCAGG GAGGCCTTTA GGGGCGGAGA GCAAGGGACA
  GCTGCCTTTG CACATGGCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12748559	S52337_77_6	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8252876					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36787717 () rs orientation: reverse

Symbol	Name	Function Class
Ptn	pleiotrophin	603 bp upstream
Rr146140	regulatory region 146140	within coordinates
Tssr60337	transcription start site region 60337	808 bp upstream
Tssr60338	transcription start site region 60338	782 bp upstream
Tssr60339	transcription start site region 60339	758 bp upstream
Tssr60340	transcription start site region 60340	725 bp upstream
Tssr60341	transcription start site region 60341	691 bp upstream
Tssr60342	transcription start site region 60342	656 bp upstream
Tssr60343	transcription start site region 60343	635 bp upstream
Tssr60344	transcription start site region 60344	595 bp upstream