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rs8252877 SNP Detail
Summary
  • ID
    rs8252877
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr7:19432318 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          ACTCG GCAAGGGGAG GTAAACAGAC
M
TTTGGGAAGA GCGGGTGCTC TGTTT                                      

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129/Sv
129S1/SvImJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PWD/PhJ
SPRET/EiJ
WSB/EiJ
ss12748560 D00466_78_1 ROCHEBIO RPAMM f SNP C C C C C C C C C A C C C C C
ss48163976 NES11834314 PERLEGEN MM_PANEL2 r SNP G G G G G G T G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129/Sv
129S1/SvImJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PWD/PhJ
SPRET/EiJ
WSB/EiJ
rs8252877 SNP C C C C C C C C C C C A C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss48163976 NES11834314 PERLEGEN MM_PANEL r SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19432318 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 1315 bp distal
Cpgi18508 CpG island 18508 6 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 474 bp distal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 1718 bp distal
Rr155347 regulatory region 155347 1283 bp proximal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 1932 bp downstream
Tssr2113 transcription start site region 2113 1902 bp downstream
Tssr2114 transcription start site region 2114 1776 bp downstream
Tssr2115 transcription start site region 2115 1748 bp downstream
Tssr2116 transcription start site region 2116 1678 bp downstream
Tssr2117 transcription start site region 2117 1624 bp downstream
Tssr2118 transcription start site region 2118 1529 bp downstream
Tssr2119 transcription start site region 2119 1552 bp upstream
Tssr2120 transcription start site region 2120 1479 bp downstream
Tssr2121 transcription start site region 2121 1453 bp downstream
Tssr2122 transcription start site region 2122 728 bp upstream
Tssr64882 transcription start site region 64882 1997 bp downstream
Tssr64883 transcription start site region 64883 1980 bp downstream
Tssr64884 transcription start site region 64884 1952 bp downstream
Tssr64885 transcription start site region 64885 1874 bp downstream
Tssr64886 transcription start site region 64886 1839 bp downstream
Tssr64887 transcription start site region 64887 1821 bp downstream
Tssr64888 transcription start site region 64888 1603 bp downstream
Tssr64889 transcription start site region 64889 1496 bp downstream
Tssr64890 transcription start site region 64890 1462 bp downstream
Tssr64891 transcription start site region 64891 1434 bp downstream
Tssr64892 transcription start site region 64892 1403 bp downstream
Tssr64893 transcription start site region 64893 1309 bp downstream
Tssr64894 transcription start site region 64894 895 bp downstream
Tssr64895 transcription start site region 64895 816 bp downstream
Tssr64896 transcription start site region 64896 792 bp downstream
Tssr70976 transcription start site region 70976 1954 bp upstream
Tssr70977 transcription start site region 70977 1933 bp upstream
Tssr70978 transcription start site region 70978 1910 bp upstream
Tssr70979 transcription start site region 70979 1902 bp upstream
Tssr70980 transcription start site region 70980 1888 bp upstream
Tssr70981 transcription start site region 70981 1864 bp upstream
Tssr70982 transcription start site region 70982 1835 bp upstream
Tssr70983 transcription start site region 70983 1814 bp upstream
Tssr70984 transcription start site region 70984 1754 bp upstream
Tssr70985 transcription start site region 70985 1719 bp upstream
Tssr70986 transcription start site region 70986 1690 bp upstream
Tssr70987 transcription start site region 70987 1645 bp upstream
Tssr70988 transcription start site region 70988 1626 bp upstream
Tssr70989 transcription start site region 70989 1588 bp upstream
Tssr70990 transcription start site region 70990 1569 bp upstream
Tssr70991 transcription start site region 70991 1539 bp upstream
Tssr70992 transcription start site region 70992 1527 bp upstream
Tssr70993 transcription start site region 70993 1498 bp upstream
Tssr70994 transcription start site region 70994 1483 bp upstream
Tssr70995 transcription start site region 70995 1450 bp upstream
Tssr70996 transcription start site region 70996 1424 bp upstream
Tssr70997 transcription start site region 70997 1358 bp upstream
Tssr70998 transcription start site region 70998 1338 bp upstream
Tssr70999 transcription start site region 70999 1282 bp upstream
Tssr71000 transcription start site region 71000 871 bp upstream
Tssr71001 transcription start site region 71001 805 bp upstream
Tssr71002 transcription start site region 71002 786 bp upstream
Tssr71003 transcription start site region 71003 758 bp upstream
Tssr71004 transcription start site region 71004 740 bp upstream
Tssr71005 transcription start site region 71005 395 bp upstream
Tssr71006 transcription start site region 71006 362 bp upstream
Tssr71007 transcription start site region 71007 300 bp upstream
Tssr71008 transcription start site region 71008 194 bp upstream
Tssr71009 transcription start site region 71009 132 bp upstream
Tssr71010 transcription start site region 71010 12 bp upstream
Tssr71011 transcription start site region 71011 within coordinates
Tssr71012 transcription start site region 71012 26 bp downstream
Tssr71013 transcription start site region 71013 652 bp downstream
Tssr71014 transcription start site region 71014 1201 bp downstream
Tssr71015 transcription start site region 71015 1326 bp downstream
Tssr71016 transcription start site region 71016 1562 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory