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rs8252878 SNP Detail
Summary
  • ID
    rs8252878
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:19432252 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          TGGCT CACAGATCTG AGAAGGGAAG
R
TGGGGTTCTC TGGGTGGCCG GAGTC                                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
MRL/MpJ
NZB/BlNJ
NZW/Lac
SPRET/EiJ
ss12748561 D00466_78_2 ROCHEBIO RPAMM f SNP G A A A A A A G A G A A G G G
ss45995660 mCV25053829 ABI CRAMUS_MOUSE r SNP C T T
ss148481710 ENSMUSSNP2457675 ENSEMBL ENSEMBL_Sanger r SNP C T T
SNP Consensus Information
SNP Consensus Type
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
MRL/MpJ
NZB/BlNJ
NZW/Lac
SPRET/EiJ
rs8252878 SNP G G A A A A A A G A G A A G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19432252 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 1249 bp distal
Cpgi18508 CpG island 18508 72 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 408 bp distal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 1652 bp distal
Rr155347 regulatory region 155347 1349 bp proximal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 1866 bp downstream
Tssr2113 transcription start site region 2113 1836 bp downstream
Tssr2114 transcription start site region 2114 1710 bp downstream
Tssr2115 transcription start site region 2115 1682 bp downstream
Tssr2116 transcription start site region 2116 1612 bp downstream
Tssr2117 transcription start site region 2117 1558 bp downstream
Tssr2118 transcription start site region 2118 1463 bp downstream
Tssr2119 transcription start site region 2119 1486 bp upstream
Tssr2120 transcription start site region 2120 1413 bp downstream
Tssr2121 transcription start site region 2121 1387 bp downstream
Tssr2122 transcription start site region 2122 662 bp upstream
Tssr64881 transcription start site region 64881 1990 bp downstream
Tssr64882 transcription start site region 64882 1931 bp downstream
Tssr64883 transcription start site region 64883 1914 bp downstream
Tssr64884 transcription start site region 64884 1886 bp downstream
Tssr64885 transcription start site region 64885 1808 bp downstream
Tssr64886 transcription start site region 64886 1773 bp downstream
Tssr64887 transcription start site region 64887 1755 bp downstream
Tssr64888 transcription start site region 64888 1537 bp downstream
Tssr64889 transcription start site region 64889 1430 bp downstream
Tssr64890 transcription start site region 64890 1396 bp downstream
Tssr64891 transcription start site region 64891 1368 bp downstream
Tssr64892 transcription start site region 64892 1337 bp downstream
Tssr64893 transcription start site region 64893 1243 bp downstream
Tssr64894 transcription start site region 64894 829 bp downstream
Tssr64895 transcription start site region 64895 750 bp downstream
Tssr64896 transcription start site region 64896 726 bp downstream
Tssr70973 transcription start site region 70973 1998 bp upstream
Tssr70974 transcription start site region 70974 1965 bp upstream
Tssr70975 transcription start site region 70975 1940 bp upstream
Tssr70976 transcription start site region 70976 1888 bp upstream
Tssr70977 transcription start site region 70977 1867 bp upstream
Tssr70978 transcription start site region 70978 1844 bp upstream
Tssr70979 transcription start site region 70979 1836 bp upstream
Tssr70980 transcription start site region 70980 1822 bp upstream
Tssr70981 transcription start site region 70981 1798 bp upstream
Tssr70982 transcription start site region 70982 1769 bp upstream
Tssr70983 transcription start site region 70983 1748 bp upstream
Tssr70984 transcription start site region 70984 1688 bp upstream
Tssr70985 transcription start site region 70985 1653 bp upstream
Tssr70986 transcription start site region 70986 1624 bp upstream
Tssr70987 transcription start site region 70987 1579 bp upstream
Tssr70988 transcription start site region 70988 1560 bp upstream
Tssr70989 transcription start site region 70989 1522 bp upstream
Tssr70990 transcription start site region 70990 1503 bp upstream
Tssr70991 transcription start site region 70991 1473 bp upstream
Tssr70992 transcription start site region 70992 1461 bp upstream
Tssr70993 transcription start site region 70993 1432 bp upstream
Tssr70994 transcription start site region 70994 1417 bp upstream
Tssr70995 transcription start site region 70995 1384 bp upstream
Tssr70996 transcription start site region 70996 1358 bp upstream
Tssr70997 transcription start site region 70997 1292 bp upstream
Tssr70998 transcription start site region 70998 1272 bp upstream
Tssr70999 transcription start site region 70999 1216 bp upstream
Tssr71000 transcription start site region 71000 805 bp upstream
Tssr71001 transcription start site region 71001 739 bp upstream
Tssr71002 transcription start site region 71002 720 bp upstream
Tssr71003 transcription start site region 71003 692 bp upstream
Tssr71004 transcription start site region 71004 674 bp upstream
Tssr71005 transcription start site region 71005 329 bp upstream
Tssr71006 transcription start site region 71006 296 bp upstream
Tssr71007 transcription start site region 71007 234 bp upstream
Tssr71008 transcription start site region 71008 128 bp upstream
Tssr71009 transcription start site region 71009 66 bp upstream
Tssr71010 transcription start site region 71010 23 bp downstream
Tssr71011 transcription start site region 71011 56 bp downstream
Tssr71012 transcription start site region 71012 92 bp downstream
Tssr71013 transcription start site region 71013 718 bp downstream
Tssr71014 transcription start site region 71014 1267 bp downstream
Tssr71015 transcription start site region 71015 1392 bp downstream
Tssr71016 transcription start site region 71016 1628 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory