rs8253073 SNP Detail

Summary

• ID
  rs8253073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:80015306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCATCAG ATGAAAATGA
  CCCCTACATT CACAAAACAT CCGGGTCTGG TTGGTTTAAT AAGGAGTCCA GACTGATACA
  TGAAGACTTT CACTATTGTA AATTTCTCAT AGTAAAAGGG CCATGGAAGC TCAAATCACC
  GTCCCAGCCT TACTAAGGCG CATGCTTTTA AAATGTCTGA AAAACTTAAA AATTATTGCA
  Y
  AGAGTTAATT TTTGTTGAAA TTAAGGCCTT TAAAATACTG ACACAACCTG CGTATCACAT
  TCAAGGGGTT CTGTTGTGGA GAAATTTAAA TAAGGTTTAC ATTGTAATTT TTTATAATTC
  AACTTGCAAC CACAAAATAG ATGGGGGAGA TAGGAGGAAA GGGCCAGGGC TCCAGCCACT
  CTTAAGAGAC ACTTGAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12748809	Cyp1b1_2_AN2642_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253073					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80015306 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cyp1b1	cytochrome P450, family 1, subfamily b, polypeptide 1			Intron
				mRNA-UTR
Tssr149448	transcription start site region 149448			358 bp upstream
Tssr149449	transcription start site region 149449			218 bp upstream