rs8253082 SNP Detail

Summary

• ID
  rs8253082
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80016534 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTGAA ATTTGCCCAA TTCCAGGAAA
  M
  GAGCCTGACT AAATCAATCC GTTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12748818	Cyp1b1_2_AN2643_7	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C	C	A	C	C		C		C
ss48381220	NES12267674	PERLEGEN	MM_PANEL2	r	SNP		G									G		G		T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8253082					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381220	NES12267674	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80016534 () rs orientation: reverse

Symbol	Name	Function Class
Cyp1b1	cytochrome P450, family 1, subfamily b, polypeptide 1	within coordinates
Tssr149448	transcription start site region 149448	1586 bp upstream
Tssr149449	transcription start site region 149449	1446 bp upstream