rs8253087 SNP Detail

Summary

• ID
  rs8253087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80016120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGCCAT CCTAAATAAA
  AGAAACTGAT TTTAGGCATC TCTGCTGTCT CAAGAAGCAG TTGTTAAACA ACCTCCCAAG
  ACAATCTTCA GATTCTGACT TTAAAAACAA AAACAAAAGA CACACAGACT TTAATACTCA
  ACTTAAAAAA CAACTACAAC AACAATAGTA AGAACTCGGA AAAAGAAACT ACCAATTACT
  R
  GTTGTAGTGA GCCTCCTATC ATATGGTCTC TAATGAACAC CCAGAACATT CATGGCCTTT
  ATTTACTTAT CATTTATTTA TTTTTACATT TGGCATTTGT TCTTAGGCAA AGGTTAGGTT
  TCTCACCTTC TGCGAGATAA TGATCACATT TTCTCTAGCT TCAACTGGAA CGAAATAATC
  AAGATGGATT TTAAACTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12748823	Cyp1b1_2_AN2644_5	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G	G	G	A	G	G		G	A		G
ss48381223	NES12267669	PERLEGEN	MM_PANEL2	f	SNP		G										G		G			A		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8253087					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381223	NES12267669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80016120 () rs orientation: forward

Symbol	Name	Function Class
Cyp1b1	cytochrome P450, family 1, subfamily b, polypeptide 1	within coordinates
Tssr149448	transcription start site region 149448	1172 bp upstream
Tssr149449	transcription start site region 149449	1032 bp upstream