rs8253314 SNP Detail

Summary

• ID
  rs8253314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194813905 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                     AA ATAGGTTCTT ACTGTATACT AGACAGGGTA TGCAACTGTC
  AGCTCACTGT TGCAGATTAG GGTTAGGCTC CACCCTTGCA GANTTTTNAA AAGGAGTAAN
  R
  CCGGGCTATA TGCAAACCGA GTNCCCATAA TGCCTTGTTT TCTTTGGAGT CGAAGGTTCC
  TNCAAGTGGA AAACTTCCTG GAGCTGACCT ACTAGGTATT GAACCAGTTT CTGCATTGCT
  GAATCAATCT CCCAAGGGNA ATTCCACAGA AATCCCAGGG GCTTGGAGTA AACAAGACCG
  CGCCTANGCC CAGCTAGAGG AAGTTTTATT CCGGAACCCA GCGCCATTTC TGGGTGGGAC
  TGCTTT                                                           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749095	M34164_AN747_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253314					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194813905 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1251	CpG island 1251	227 bp distal
Cr1l	complement C3b/C4b receptor 1 like	27 bp upstream
Gm32313	predicted gene, 32313	within coordinates
Rr29235	regulatory region 29235	within coordinates
Rr372684	regulatory region 372684	within coordinates
Rr396746	regulatory region 396746	1035 bp downstream
Tssr383	transcription start site region 383	168 bp upstream
Tssr10864	transcription start site region 10864	33 bp upstream
Tssr15870	transcription start site region 15870	190 bp upstream
Tssr15871	transcription start site region 15871	144 bp upstream
Tssr15872	transcription start site region 15872	93 bp upstream
Tssr15873	transcription start site region 15873	63 bp upstream
Tssr15874	transcription start site region 15874	9 bp upstream