rs8253316 SNP Detail

Summary

• ID
  rs8253316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194813843 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTTT CTTTGGAGTC GAAGGTTCCT
  R
  CAAGTGGAAA ACTTCCTGGA GCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749097	M34164_AN747_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253316					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194813843 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1251	CpG island 1251	165 bp distal
Cr1l	complement C3b/C4b receptor 1 like	within coordinates
Gm32313	predicted gene, 32313	within coordinates
Rr29235	regulatory region 29235	within coordinates
Rr372684	regulatory region 372684	within coordinates
Rr396746	regulatory region 396746	973 bp downstream
Tssr383	transcription start site region 383	106 bp upstream
Tssr10864	transcription start site region 10864	95 bp upstream
Tssr15870	transcription start site region 15870	128 bp upstream
Tssr15871	transcription start site region 15871	82 bp upstream
Tssr15872	transcription start site region 15872	31 bp upstream
Tssr15873	transcription start site region 15873	1 bp upstream
Tssr15874	transcription start site region 15874	1 bp downstream