rs8253478 SNP Detail

Summary

• ID
  rs8253478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79417832 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATTCT TTGAAAAAGC TCGCCTGCGC
  Y
  GGGGTTTGAG GCTGAGCCGG TGACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749289	X68838_AN806_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253478					SNP	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79417832 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi462	CpG island 462	within coordinates
Rr17631	regulatory region 17631	within coordinates
Rr29696	regulatory region 29696	831 bp distal
Rr29697	regulatory region 29697	within coordinates
Scg2	secretogranin II	within coordinates
Tssr12435	transcription start site region 12435	101 bp upstream
Tssr12436	transcription start site region 12436	80 bp upstream
Tssr12437	transcription start site region 12437	35 bp upstream
Tssr12438	transcription start site region 12438	7 bp upstream