rs8253505 SNP Detail

Summary

• ID
  rs8253505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69331469 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAGT CCAGAGATAA ATACTTATCT
  R
  TGGTTTGTTG AAGCTGCTTC TATAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12749320	M63335_AN819_4	ROCHEBIO	RPAMM	f	SNP	G			G	G	G	A	G	G		G	A	A	G				G		G	G				A
ss46234311	mCV24073095	ABI	CRAMUS_MOUSE	r	SNP			C									T		C
ss60627407	NES16288143	PERLEGEN	MM_PANEL2	r	SNP		C			C	C		C		C	C			C	C		T		C			C	T			C
ss145084010	ENSMUSSNP6878254	ENSEMBL	ENSEMBL_Sanger	r	SNP			C											C
ss322692292	CHEV_8_71402716	CHEVERUD	SCREENING_POP	r	SNP																C								C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8253505					SNP	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	A	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627407	NES16288143	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69331469 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1596 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	527 bp proximal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1738 bp upstream
Rr664453	regulatory region 664453	1643 bp distal
Rr664454	regulatory region 664454	within coordinates
Rr664455	regulatory region 664455	1194 bp proximal
Rr664456	regulatory region 664456	1685 bp proximal
Tssr77601	transcription start site region 77601	1731 bp upstream
Tssr77602	transcription start site region 77602	1814 bp upstream
Tssr77603	transcription start site region 77603	1833 bp upstream
Tssr77604	transcription start site region 77604	1897 bp upstream
Tssr77605	transcription start site region 77605	1906 bp upstream