rs8253512 SNP Detail

Summary

• ID
  rs8253512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69331786 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATACT CCAGGGCACA TAACTAGAAT
  R
  TGGCCAACCT CTGAAAGAAG TATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749327	M63335_AN820_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253512					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69331786 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1279 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	210 bp proximal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1421 bp upstream
Rr664453	regulatory region 664453	1960 bp distal
Rr664454	regulatory region 664454	296 bp distal
Rr664455	regulatory region 664455	877 bp proximal
Rr664456	regulatory region 664456	1368 bp proximal
Tssr77601	transcription start site region 77601	1414 bp upstream
Tssr77602	transcription start site region 77602	1497 bp upstream
Tssr77603	transcription start site region 77603	1516 bp upstream
Tssr77604	transcription start site region 77604	1580 bp upstream
Tssr77605	transcription start site region 77605	1589 bp upstream