rs8253513 SNP Detail

Summary

• ID
  rs8253513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69331654 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AATAG CCACACAGCC GAATTTCAAG
  Y
  TTAAAAGTCA TTTGATCAGA CTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749328	M63335_AN820_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253513					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69331654 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1411 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	342 bp proximal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1553 bp upstream
Rr664453	regulatory region 664453	1828 bp distal
Rr664454	regulatory region 664454	164 bp distal
Rr664455	regulatory region 664455	1009 bp proximal
Rr664456	regulatory region 664456	1500 bp proximal
Tssr77601	transcription start site region 77601	1546 bp upstream
Tssr77602	transcription start site region 77602	1629 bp upstream
Tssr77603	transcription start site region 77603	1648 bp upstream
Tssr77604	transcription start site region 77604	1712 bp upstream
Tssr77605	transcription start site region 77605	1721 bp upstream