rs8253514 SNP Detail

Summary

• ID
  rs8253514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:69333516 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTCC GGGTCTGCAG GTGGGGGTAG
  R
  GGGAGTTGGC GCGAAAAACG TACCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749329	M63335_AN821_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253514					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69333516 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	within coordinates
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	1349 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	Intron
Rr664455	regulatory region 664455	363 bp distal
Rr664456	regulatory region 664456	within coordinates
Rr664457	regulatory region 664457	738 bp proximal
Rr664458	regulatory region 664458	1071 bp proximal
Rr664459	regulatory region 664459	1697 bp proximal
Tssr77601	transcription start site region 77601	300 bp downstream
Tssr77602	transcription start site region 77602	222 bp downstream
Tssr77603	transcription start site region 77603	192 bp downstream
Tssr77604	transcription start site region 77604	147 bp downstream
Tssr77605	transcription start site region 77605	134 bp downstream