rs8253515 SNP Detail

Summary

• ID
  rs8253515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69333482 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCGCG AAAAACGTAC CGTCTGCTGC
  R
  GCCACCCCTC CTCGGAAGGC GGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12749330	M63335_AN821_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8253515					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69333482 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	within coordinates
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	1315 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664454	regulatory region 664454	1992 bp distal
Rr664455	regulatory region 664455	329 bp distal
Rr664456	regulatory region 664456	within coordinates
Rr664457	regulatory region 664457	772 bp proximal
Rr664458	regulatory region 664458	1105 bp proximal
Rr664459	regulatory region 664459	1731 bp proximal
Tssr77601	transcription start site region 77601	266 bp downstream
Tssr77602	transcription start site region 77602	188 bp downstream
Tssr77603	transcription start site region 77603	158 bp downstream
Tssr77604	transcription start site region 77604	113 bp downstream
Tssr77605	transcription start site region 77605	100 bp downstream