rs8253516 SNP Detail

Summary

• ID
  rs8253516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69334843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA GAAAATAGGA GCAAACTTTC
  R
  ATTCACATTT CAGAAAGTAT ACCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SM/J	SPRET/EiJ
ss12749331	M63335_AN822_1	ROCHEBIO	RPAMM	f	SNP	A			A	A	A	G	A	A	A	G	G	A				A	A	A			A
ss46252037	mCV24073107	ABI	CRAMUS_MOUSE	f	SNP		A			A						G
ss60627399	NES16288086	PERLEGEN	MM_PANEL2	f	SNP														A		G				G
ss145084071	ENSMUSSNP4547014	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss322692309	CHEV_8_71406090	CHEVERUD	SCREENING_POP	f	SNP															A						A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SM/J	SPRET/EiJ
rs8253516					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627399	NES16288086	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69334843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	567 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1690 bp distal
Rr664456	regulatory region 664456	590 bp distal
Rr664457	regulatory region 664457	89 bp distal
Rr664458	regulatory region 664458	235 bp distal
Rr664459	regulatory region 664459	370 bp proximal
Tssr77601	transcription start site region 77601	1627 bp downstream
Tssr77602	transcription start site region 77602	1549 bp downstream
Tssr77603	transcription start site region 77603	1519 bp downstream
Tssr77604	transcription start site region 77604	1474 bp downstream
Tssr77605	transcription start site region 77605	1461 bp downstream