rs8253517 SNP Detail

Summary

• ID
  rs8253517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69334868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGCCTT TATTTCTGCG
  TATAGTTGTA AATGTCTTGT TATCAAAGGA AAGAGAATCC ATCATGGCAG AACTGCACGA
  AAGAAACGAA TCCTGGGTGT TTTGAGGATA CTGGAGATTC TGCCTCTCCG GTGGCAGGTT
  TGCAACTCTG GTTAAGAAAA TAGGAGCAAA CTTTCGATTC ACATTTCAGA AAGTATACCA
  Y
  AGTAGAACAC GACTTTTACC GTAAACTCCC ATAGAAAAGG TCGCCTACAT TTTTAGGTTT
  TGCTAAAGGT TCCTTTAGAA GCTCTGGACC CAGCTTCTCA GTTACTTAGT GTCACCCTTC
  TGGGGTTAGC TGCATGAGCT CTAACATTAG GAAAGTTGGC AAGACTCACA GTGCCCTGGG
  GCTCCTCCCT TATACTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749332	M63335_AN822_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253517					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69334868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	592 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1715 bp distal
Rr664456	regulatory region 664456	615 bp distal
Rr664457	regulatory region 664457	114 bp distal
Rr664458	regulatory region 664458	260 bp distal
Rr664459	regulatory region 664459	345 bp proximal
Tssr77601	transcription start site region 77601	1652 bp downstream
Tssr77602	transcription start site region 77602	1574 bp downstream
Tssr77603	transcription start site region 77603	1544 bp downstream
Tssr77604	transcription start site region 77604	1499 bp downstream
Tssr77605	transcription start site region 77605	1486 bp downstream