rs8253523 SNP Detail

Summary

• ID
  rs8253523
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69333992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA GGTGGGAGGA CGCGTTGTGT
  K
  CATTCCAACT GTACAGGGCG CTGTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss12749338	M63335_AN825_2	ROCHEBIO	RPAMM	f	SNP	T		T		T	G	T	T	T	G	T		T	T	T
ss145084035	ENSMUSSNP4702140	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T							T
ss322692298	CHEV_8_71405239	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs8253523					SNP	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69333992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	within coordinates
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	1825 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	839 bp distal
Rr664456	regulatory region 664456	within coordinates
Rr664457	regulatory region 664457	262 bp proximal
Rr664458	regulatory region 664458	595 bp proximal
Rr664459	regulatory region 664459	1221 bp proximal
Tssr77601	transcription start site region 77601	776 bp downstream
Tssr77602	transcription start site region 77602	698 bp downstream
Tssr77603	transcription start site region 77603	668 bp downstream
Tssr77604	transcription start site region 77604	623 bp downstream
Tssr77605	transcription start site region 77605	610 bp downstream