rs8253527 SNP Detail

Summary

• ID
  rs8253527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69331942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAATTA GAGCTTCCTA
  TATACTTCTT TCAGAGGTTG GCCATATTCT AGTTATGTGC CCTGGAGTAT CTCTGCCATT
  TCCAAAGTTG TTCAGTGGGG TTTCGCTCTT GCCAACTTTC AAGATCCACC ACATGCGTTG
  GAGCCAGTAA TGAACGTGGA TGATGCATTG CTTAGCGATT GCAGTGCAAG ATGAGATGGC
  R
  AGACATCTGG CTGGAATTCA TCTACACAAC AGCATGTTTG GCTTTTATCT GATAGTTGTG
  AGAAATTTAA AAAGCGGGCT TATATTAAAG TATATAGTTT TTGATCCCCT TAACCTCCAA
  GGGTGTGTGT GTGTGTGTGT AGAGAGAGAG GGAACCATCC TAAAAATATT GAGATCAGTA
  AAGAGAACTA ATTTTTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12749342	M63335_AN826_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8253527					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69331942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1123 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	54 bp proximal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1265 bp upstream
Rr664454	regulatory region 664454	452 bp distal
Rr664455	regulatory region 664455	721 bp proximal
Rr664456	regulatory region 664456	1212 bp proximal
Tssr77601	transcription start site region 77601	1258 bp upstream
Tssr77602	transcription start site region 77602	1341 bp upstream
Tssr77603	transcription start site region 77603	1360 bp upstream
Tssr77604	transcription start site region 77604	1424 bp upstream
Tssr77605	transcription start site region 77605	1433 bp upstream