rs8253528 SNP Detail

Summary

• ID
  rs8253528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69332067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                  C
  AGTAATGAAC GTGGATGATG CATTGCTTAG CGATTGCAGT GCAAGATGAG ATGGCNAGAC
  ATCTGGCTGG AATTCATCTA CACAACAGCA TGTTTGGCTT TTATCTGATA GTTGTGAGAA
  ATTTAAAAAG CGGGCTTATA TTAAAGTATA TAGTTTTTGA TCCCCTTAAC CTCCAAGGGT
  R
  TGTGTGTGTG TGTGTAGAGA GAGAGGGAAC CATCCTAAAA ATATTGAGAT CAGTAAAGAG
  AACTAATTTT TTGAGGTGGT TTCTCAGCAT TAAGGTGGGG AATTTAATGT TTATTGGNTT
  TTTTTTTCTA GCTAATCAGC ACCCTTTTCA TTTAAAAAGA TACTTGCAGA TGAGCACAGT
  ATATGATGTG CTTTTATTTT TC                                         
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12749343	M63335_AN826_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8253528					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69332067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	998 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	within coordinates
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1140 bp upstream
Rr664454	regulatory region 664454	577 bp distal
Rr664455	regulatory region 664455	596 bp proximal
Rr664456	regulatory region 664456	1087 bp proximal
Tssr77601	transcription start site region 77601	1133 bp upstream
Tssr77602	transcription start site region 77602	1216 bp upstream
Tssr77603	transcription start site region 77603	1235 bp upstream
Tssr77604	transcription start site region 77604	1299 bp upstream
Tssr77605	transcription start site region 77605	1308 bp upstream