rs8253531 SNP Detail

Summary

• ID
  rs8253531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69334313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT AGCTGAGAGC ACATGGGATT
  Y
  TCTAGAGCCT AAGGGAGATC GCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12749346	M63335_AN827_2	ROCHEBIO	RPAMM	f	SNP	T	T	C	T	T	T	C	C	T				T	T	T			C
ss60627400	NES16288085	PERLEGEN	MM_PANEL2	f	SNP		T						T		T		C				C			T
ss322692303	CHEV_8_71405560	CHEVERUD	SCREENING_POP	f	SNP											T						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8253531					SNP	T	T	C	T	T	T	C	?	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627400	NES16288085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69334313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	37 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1160 bp distal
Rr664456	regulatory region 664456	60 bp distal
Rr664457	regulatory region 664457	within coordinates
Rr664458	regulatory region 664458	274 bp proximal
Rr664459	regulatory region 664459	900 bp proximal
Tssr77601	transcription start site region 77601	1097 bp downstream
Tssr77602	transcription start site region 77602	1019 bp downstream
Tssr77603	transcription start site region 77603	989 bp downstream
Tssr77604	transcription start site region 77604	944 bp downstream
Tssr77605	transcription start site region 77605	931 bp downstream