rs8253532 SNP Detail

Summary

• ID
  rs8253532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69334316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTCCTGTG CTCGGCTTAG
  CTCAGTACTC AAGAAAGCCC AGAAATGAAC CTACCCTCCA GAAAACGAGG TTCAGCCACC
  AGCCGACTGG AGCCTGTGGC TTGGAGGTTG CCAGTTCAGC TCTGTGTCCT TTCCTTGCTG
  TCCCAGGAGA GGCTCGCCCT AAGGGAGGCG CTCAGCTAGC TGAGAGCACA TGGGATTCTC
  Y
  AGAGCCTAAG GGAGATCGCT TTCAACACTA GGTGAAAAAA AAAAAAAAAG CGGCCACCTC
  CACGGCTCTG CCTGCTCTCT GCCTAGAGAA GACTAGGGTC AGTAGCAAGT TGCTTTATGG
  CCTTGAAGTC GAGACCTGCC CACAATTGAG AAGCCTTGTA ACTTGAACCT TGATTGAGCT
  AACAGAACAC AGACTCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749347	M63335_AN827_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253532					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69334316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	40 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1163 bp distal
Rr664456	regulatory region 664456	63 bp distal
Rr664457	regulatory region 664457	within coordinates
Rr664458	regulatory region 664458	271 bp proximal
Rr664459	regulatory region 664459	897 bp proximal
Tssr77601	transcription start site region 77601	1100 bp downstream
Tssr77602	transcription start site region 77602	1022 bp downstream
Tssr77603	transcription start site region 77603	992 bp downstream
Tssr77604	transcription start site region 77604	947 bp downstream
Tssr77605	transcription start site region 77605	934 bp downstream